SNP Profiles of PA150 [PER]   View Data

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 Key

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_Input profile
AGCGTTCCTTGTCCGGCTAACTAACGCC
1._PA_150_[PER]
AACCTTAATTTTCCGGCTAGCTAAGGCT
2._PA_150_[PER]
AGCGCTACCCGTCTAGCTAGCTATCCCT
3._GC-01-034-2-11
AGCGCTACCCGTCTAGCTAGCTATCCCT
4._PA_150_[PER]
AACGTTACCTTTCCGGTTGGCTAAGGTT
5._GC-01-034-2-11
GGGGCCACCTTTCCAGCCAGCTAACCCT
6._GC-01-034-2-11
GGGGCCACCTTTCCAGCCAGCTAACCCT
7._GC-01-034-2-11
AACGTTACCTTTCCGGTTGGCTAAGGTT
8._PA_150_[PER]
GGGGCCACCTTTCCAGCCAGCTAACCCT
9._PA_150_[PER]
GGGGCCACCTTTCCAGCCAGCTAACCCT
10._PA_150_[PER]
GGGGCCACCTTTCCAGCCAGCTAACCCT
11._PA_150_[PER]
GGGGCCACCTTTCCAGCCAGCTAACCCT
12._PA_150_[PER]
AACGTTACCTTTCCGGTTGGCTAAGGTT
13._PA_150_[PER]
AACGTTACCTTTCCGGTTGGCTAAGGTT
14._PA_150_[PER]
AACGTTACCTTTCCGGTTGGCTAAGGTT
15._PA_150_[PER]
AACGTTACCTTTCCGGTTGGCTAAGGTT
16._GC-01-034-2-11
AACGTTACCTTTCCGGTTGGCTAAGGTT
17._GC-01-034-2-11
AACGTTACCTTTCCGGTTGGCTAAGGTT
18._GC-01-034-2-11
GGGGCCACCTTTCCAGCCAGCTAACCCT
19._GC-01-034-2-11
AACGTTACCTTTCCGGTTGGCTAAGGTT
20._GC-01-034-2-11
GGGGCCACCTTTCCAGCCAGCTAACCCT
21._GC-01-034-2-11
AACGTTACCTTTCCGGTTGGCTAAGGTT
22._PA_150_[PER]
AGGGCCACTTTTCCGGCCAGCCAACCCT
23._PA_150_[PER]
AGGGCCACTTTTCCGGCCAGCCAACCCT
24._PA_150_[PER]
AGGGCCACTTTTCCGGCCAGCCAACCCT
25._PA_150_[PER]
AGGGCCACTTTTCCGGCCAGCCAACCCT
26._RUQ_1731
_GG___TT_GG_AG____
27._GC-01-34-2-11
AACGAAACAGAA_GGAAGGAGAAGGAA
28._GC-01-34-2-11
AACGAAACAGAA_GGAAGGAGAAGGAA
29._GC-01-34-2-11
GGCCGGACAGAA_AGGGAGAGAACCAG
30._PA_150_[PER]_Fld#_173_Plt#_1
AGCCGGACAAAA_GGGGAGGGAACCAG
31._RUQ_1731
AGCCGGACAAAA_GGGGAGGGAACCAG
 1516171819202122232425262728
_Input profile
CCCCGGGGCTACGGGGCCACAGGGAACC
1._PA_150_[PER]
CTCCGGAACTAAGGGTCTCCAAGGAACT
2._PA_150_[PER]
CTCGGGAGTTACCCGTCTACAGGGAACC
3._GC-01-034-2-11
CTCGGGAGTTACCCGTCTACAGGGAACC
4._PA_150_[PER]
CTGGGTGGTTAAGGTTCTACAAGGAACC
5._GC-01-034-2-11
CCGGGGAGTTCCCGGTCCACAAGGAACC
6._GC-01-034-2-11
CCGGGGAGTTCCCGGTCCACAAGGAACC
7._GC-01-034-2-11
CTGGGTGGTTAAGGTTCTACAAGGAACC
8._PA_150_[PER]
CCGGGGAGTTCCCGGTCCACAAGGAACC
9._PA_150_[PER]
CCGGGGAGTTCCCGGTCCACAAGGAACC
10._PA_150_[PER]
CCGGGGAGTTCCCGGTCCACAAGGAACC
11._PA_150_[PER]
CCGGGGAGTTCCCGGTCCACAAGGAACC
12._PA_150_[PER]
CTGGGTGGTTAAGGTTCTACAAGGAACC
13._PA_150_[PER]
CTGGGTGGTTAAGGTTCTACAAGGAACC
14._PA_150_[PER]
CTGGGTGGTTAAGGTTCTACAAGGAACC
15._PA_150_[PER]
CTGGGTGGTTAAGGTTCTACAAGGAACC
16._GC-01-034-2-11
CTGGGTGGTTAAGGTTCTACAAGGAACC
17._GC-01-034-2-11
CTGGGTGGTTAAGGTTCTACAAGGAACC
18._GC-01-034-2-11
CCGGGGAGTTCCCGGTCCACAAGGAACC
19._GC-01-034-2-11
CTGGGTGGTTAAGGTTCTACAAGGAACC
20._GC-01-034-2-11
CCGGGGAGTTCCCGGTCCACAAGGAACC
21._GC-01-034-2-11
CTGGGTGGTTAAGGTTCTACAAGGAACC
22._PA_150_[PER]
CCGGGGAATTACCGTTCTACAGGGAACC
23._PA_150_[PER]
CCGGGGAATTACCGTTCTACAGGGAACC
24._PA_150_[PER]
CCGGGGAATTACCGTTCTACAGGGAACC
25._PA_150_[PER]
CCGGGGAATTACCGTTCTACAGGGAACC
26._RUQ_1731
_GGGGAA_ACCG__AA____
27._GC-01-34-2-11
AGCCAC_AAAAGGAA_AC_GGAAGG
28._GC-01-34-2-11
AGCCAC_AAAAGGAA_AC_GGAAGG
29._GC-01-34-2-11
GGCCCC_AACCCGAC_AC_GGAAGG
30._PA_150_[PER]_Fld#_173_Plt#_1
GGCCCC_AAACCGAA_AC_GGAAGG
31._RUQ_1731
GGCCCC_AAACCGAA_AC_GGAAGG
 29303132333435       
_Input profile
AAACTTGGCCTTCCX_XX_XX_XX_XX_XX_XX_X
1._PA_150_[PER]
AAAACTGGACTTGGX_XX_XX_XX_XX_XX_XX_X
2._PA_150_[PER]
AAACCTGTAAATCGX_XX_XX_XX_XX_XX_XX_X
3._GC-01-034-2-11
AAACCTGTAAATCGX_XX_XX_XX_XX_XX_XX_X
4._PA_150_[PER]
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
5._GC-01-034-2-11
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
6._GC-01-034-2-11
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
7._GC-01-034-2-11
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
8._PA_150_[PER]
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
9._PA_150_[PER]
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
10._PA_150_[PER]
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
11._PA_150_[PER]
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
12._PA_150_[PER]
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
13._PA_150_[PER]
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
14._PA_150_[PER]
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
15._PA_150_[PER]
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
16._GC-01-034-2-11
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
17._GC-01-034-2-11
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
18._GC-01-034-2-11
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
19._GC-01-034-2-11
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
20._GC-01-034-2-11
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
21._GC-01-034-2-11
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
22._PA_150_[PER]
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
23._PA_150_[PER]
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
24._PA_150_[PER]
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
25._PA_150_[PER]
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
26._RUQ_1731
GG___AC__X_XX_XX_XX_XX_XX_XX_X
27._GC-01-34-2-11
AGACAAACACATGGX_XX_XX_XX_XX_XX_XX_X
28._GC-01-34-2-11
AGACAAACACATGGX_XX_XX_XX_XX_XX_XX_X
29._GC-01-34-2-11
AGACGGCCCCATGGX_XX_XX_XX_XX_XX_XX_X
30._PA_150_[PER]_Fld#_173_Plt#_1
GGAA_CCACAAGGX_XX_XX_XX_XX_XX_XX_X
31._RUQ_1731
GGAAGGCCACAAGGX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_150_[PER]

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

1._PA_150_[PER]

68.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

2._PA_150_[PER]

65.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._PA_150_[PER] GC-01-034-2-11

65.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

4._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

10._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

11._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

12._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

13._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

14._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

15._PA_150_[PER]

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

16._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

22._PA_150_[PER]

58.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

23._PA_150_[PER]

58.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

24._PA_150_[PER]

58.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

25._PA_150_[PER]

58.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

26._PA_150_[PER] RUQ_1731

50 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._PA_150_[PER] GC-01-34-2-11

40.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

28._PA_150_[PER] GC-01-34-2-11

40.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

29._PA_150_[PER] GC-01-34-2-11

38.7 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

30._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

38.3 %
30 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

31._PA_150_[PER] RUQ_1731

37.1 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1062 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25